halophFGD

Basic Information

Locus ID: evm.TU.LG01.2230

Species & Taxonomic ID: Nitraria sibirica & 357931

Genome Assembly:

Description: MADS-box protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG01	44959188	44974539	+	evm.TU.LG01.2230

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.23	31,786.47 Da	53.41	88.94	-0.43

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00265	MADS_MEF2_like	50	121	2.66798E-43	IPR033896
Pfam	PF01486	K-box region	136	220	1.3E-19	IPR002487
Pfam	PF00319	SRF-type transcription factor (DNA-binding and dimerisation domain)	57	104	1.2E-24	IPR002100
SUPERFAMILY	SSF55455	SRF-like	50	124	1.28E-31	IPR036879
Gene3D	G3DSA:3.40.1810.10	-	61	138	1.6E-29	IPR036879
SMART	SM00432	madsneu2	48	107	6.4E-39	IPR002100
ProSiteProfiles	PS50066	MADS-box domain profile.	48	108	31.216307	IPR002100
ProSiteProfiles	PS51297	K-box domain profile.	137	241	13.645106	IPR002487
PRINTS	PR00404	MADS domain signature	85	106	4.0E-29	IPR002100
PRINTS	PR00404	MADS domain signature	70	85	4.0E-29	IPR002100
PRINTS	PR00404	MADS domain signature	50	70	4.0E-29	IPR002100
Coils	Coil	Coil	185	234	-	-

Gene Ontology

Biological Process:

GO:0006355 (regulation of DNA-templated transcription) GO:0045944 (positive regulation of transcription by RNA polymerase II)

Molecular Function:

GO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding) GO:0003677 (DNA binding) GO:0003700 (DNA-binding transcription factor activity) GO:0046983 (protein dimerization activity)

Cellular Component:

GO:0005634 (nucleus)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G62165.11	-
RefSeq	XP_024040475.1	MADS-box protein AGL42 [Citrus clementina]
Swiss-Prot	Q9FIS1	MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1
TrEMBL	A0A5C7IPT6	MADS-box protein SOC1-like OS=Acer yangbiense OX=1000413 GN=EZV62_005759 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	12	jg10149, jg13374, jg14048, jg18452, jg1862, jg2350, jg29292 ... jg34008, jg37180, jg4859, jg7583, jg7584
Aizoaceae	Mesembryanthemum crystallinum	2	gene_1379, gene_14801
Amaranthaceae	Atriplex hortensis	2	Ah003718, Ah023110
Amaranthaceae	Beta vulgaris	1	BVRB_5g101250
Amaranthaceae	Salicornia bigelovii	3	Sbi_jg23664, Sbi_jg49303, Sbi_jg7513
Amaranthaceae	Salicornia europaea	2	Seu_jg12523, Seu_jg5810
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00000344, GOSA_00001294
Amaranthaceae	Suaeda glauca	4	Sgl11207, Sgl16602, Sgl51869, Sgl57167
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000006308, gene:ENSEOMG00000014504 ... gene:ENSEOMG00000020221, gene:ENSEOMG00000027535, gene:ENSEOMG00000034051, gene:ENSEOMG00000047148
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0005650, CQ.Regalona.r1.2BG0024000 ... CQ.Regalona.r1.5AG0008500, CQ.Regalona.r1.5BG0008750
Anacardiaceae	Pistacia vera	2	pistato.v30003470, pistato.v30011980
Apiaceae	Apium graveolens	6	Ag10G00252, Ag11G03893, Ag5G02767, Ag6G01639, Ag9G00532 ... Ag9G02402
Arecaceae	Cocos nucifera	7	COCNU_07G007820, COCNU_07G007840, COCNU_08G007880 ... COCNU_08G007890, COCNU_09G003370, COCNU_10G006160, COCNU_15G004990
Arecaceae	Phoenix dactylifera	5	gene-LOC103696089, gene-LOC103697443, gene-LOC103702697 ... gene-LOC103706417, gene-LOC103710691
Asparagaceae	Asparagus officinalis	2	AsparagusV1_04.2369.V1.1, AsparagusV1_08.192.V1.1
Asteraceae	Flaveria trinervia	6	Ftri11G23769, Ftri15G21911, Ftri18G13582, Ftri3G09306 ... Ftri5G00137, Ftri9G28338
Brassicaceae	Arabidopsis thaliana	6	AT2G45660.1, AT4G11880.1, AT4G22950.1, AT5G51860.1 ... AT5G51870.3, AT5G62165.1
Brassicaceae	Eutrema salsugineum	7	Thhalv10001632m.g.v1.0, Thhalv10004954m.g.v1.0 ... Thhalv10014716m.g.v1.0, Thhalv10015303m.g.v1.0, Thhalv10026205m.g.v1.0, Thhalv10027077m.g.v1.0, Thhalv10028949m.g.v1.0
Brassicaceae	Schrenkiella parvula	8	Sp2g25340.v2.2, Sp4g27700.v2.2, Sp6g05600.v2.2 ... Sp6g14110.v2.2, Sp6g14120.v2.2, Sp6g14130.v2.2, Sp7g21040.v2.2, Sp7g23460.v2.2
Brassicaceae	Brassica nigra	16	BniB01g001370.2N, BniB02g029370.2N, BniB02g075810.2N ... BniB02g080150.2N, BniB02g081860.2N, BniB03g012800.2N, BniB03g021460.2N, BniB04g002420.2N, BniB04g002690.2N, BniB05g011830.2N, BniB05g014200.2N, BniB06g004060.2N, BniB06g010470.2N, BniB08g029500.2N, BniB08g029770.2N, BniB08g049570.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq01G2026, Ceq03G0484
Casuarinaceae	Casuarina glauca	3	Cgl01G2200, Cgl02G2131, Cgl03G0593
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno04g03110
Dunaliellaceae	Dunaliella salina	1	Dusal.0260s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g03720, gene.Thate08g07680
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-11257, nbisL1-mrna-1588, nbisL1-mrna-6116
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.2227, evm.TU.LG01.2228, evm.TU.LG01.2229 ... evm.TU.LG01.2230, evm.TU.LG04.978, evm.TU.LG10.1320
Plantaginaceae	Plantago ovata	4	Pov_00016808, Pov_00029041, Pov_00032202, Pov_00033562
Plumbaginaceae	Limonium bicolor	4	Lb1G04390, Lb1G04391, Lb1G04439, Lb2G10497
Poaceae	Echinochloa crus-galli	8	AH01.3086, AH01.5123, AH07.168, BH01.3428, BH01.5088 ... BH01.5259, BH07.33, CH01.3674
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_2AG0098670, gene-QOZ80_2AG0115010 ... gene-QOZ80_2BG0152160, gene-QOZ80_2BG0168790, gene-QOZ80_3AG0231610, gene-QOZ80_3BG0296260
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0054220.1, HORVU.MOREX.r3.1HG0054230.1 ... HORVU.MOREX.r3.4HG0412460.1, HORVU.MOREX.r3.6HG0540820.1
Poaceae	Lolium multiflorum	5	gene-QYE76_012332, gene-QYE76_017633, gene-QYE76_019242 ... gene-QYE76_019257, gene-QYE76_071315
Poaceae	Oryza coarctata	8	Oco03G000240, Oco04G000240, Oco05G001340, Oco06G001300 ... Oco11G000450, Oco12G000350, Oco19G008950, Oco20G008820
Poaceae	Oryza sativa	4	LOC_Os02g01355.1, LOC_Os03g03070.1, LOC_Os06g01890.1 ... LOC_Os10g39130.1
Poaceae	Paspalum vaginatum	3	gene-BS78_01G302600, gene-BS78_01G500700 ... gene-BS78_04G004400
Poaceae	Puccinellia tenuiflora	7	Pt_Chr0100628, Pt_Chr0100645, Pt_Chr0200696, Pt_Chr0204710 ... Pt_Chr0503074, Pt_Chr0705413, Pt_Ctg00161
Poaceae	Sporobolus alterniflorus	9	Chr01G038570, Chr04G005950, Chr06G028760, Chr06G036350 ... Chr07G005660, Chr09G003640, Chr12G000820, Chr13G021300, Chr15G020020
Poaceae	Thinopyrum elongatum	8	Tel1E01G344500, Tel1E01G344800, Tel4E01G568600 ... Tel4E01G568700, Tel4E01G586900, Tel6E01G040900, Tel6E01G042600, Tel6E01G047500
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG030260, gene_TRIDC1AG030270 ... gene_TRIDC1BG035770, gene_TRIDC4BG058350, gene_TRIDC5AG073470, gene_TRIDC6AG001250
Poaceae	Triticum aestivum	12	TraesCS1A02G199600.2, TraesCS1A02G199900.1 ... TraesCS1B02G214500.1, TraesCS1B02G214600.1.cds1, TraesCS1D02G203300.2, TraesCS1D02G203400.1, TraesCS4B02G346700.1, TraesCS4D02G341700.1, TraesCS5A02G515500.1, TraesCS6A02G011700.1, TraesCS6B02G017900.1, TraesCS6D02G014600.1
Poaceae	Zea mays	3	Zm00001eb001670_P005, Zm00001eb393670_P002 ... Zm00001eb403750_P001
Poaceae	Zoysia japonica	6	nbis-gene-3104, nbis-gene-36177, nbis-gene-36179 ... nbis-gene-4697, nbis-gene-47065, nbis-gene-52305
Poaceae	Zoysia macrostachya	5	Zma_g12810, Zma_g14800, Zma_g15593, Zma_g2204, Zma_g4551
Portulacaceae	Portulaca oleracea	7	evm.TU.LG01.2786, evm.TU.LG04.2364, evm.TU.LG04.3456 ... evm.TU.LG10.274, evm.TU.LG16.130, evm.TU.LG17.268, evm.TU.LG19.1201
Posidoniaceae	Posidonia oceanica	1	gene.Posoc07g07470
Rhizophoraceae	Bruguiera sexangula	6	evm.TU.Scaffold_11_RagTag.1315, evm.TU.Scaffold_4_RagTag.346 ... evm.TU.Scaffold_14_RagTag.255, evm.TU.Scaffold_16_RagTag.241, evm.TU.Scaffold_5_RagTag.341, evm.TU.Scaffold_9_RagTag.385
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-10913, nbisL1-mrna-18127, nbisL1-mrna-22484 ... nbisL1-mrna-29024
Rhizophoraceae	Ceriops tagal	5	nbisL1-mrna-10074, nbisL1-mrna-15726, nbisL1-mrna-1606 ... nbisL1-mrna-18560, nbisL1-mrna-7439
Rhizophoraceae	Ceriops zippeliana	5	nbisL1-mrna-12892, nbisL1-mrna-1960, nbisL1-mrna-20272 ... nbisL1-mrna-7119, nbisL1-mrna-8458
Rhizophoraceae	Kandelia candel	6	evm.TU.utg000003l.308, evm.TU.utg000006l.530 ... evm.TU.utg000007l.216, evm.TU.utg000008l.222, evm.TU.utg000010l.336, evm.TU.utg000022l.348
Rhizophoraceae	Kandelia obovata	6	Maker00000686, Maker00008916, Maker00009412, Maker00013628 ... Maker00014303, Maker00018317
Rhizophoraceae	Rhizophora apiculata	9	nbisL1-mrna-16087, nbisL1-mrna-19490, nbisL1-mrna-19491 ... nbisL1-mrna-19492, nbisL1-mrna-22672, nbisL1-mrna-3489, nbisL1-mrna-6875, nbisL1-mrna-6876, nbisL1-mrna-9239
Rhizophoraceae	Rhizophora mangle	11	nbisL1-mrna-10828, nbisL1-mrna-12717, nbisL1-mrna-12718 ... nbisL1-mrna-12719, nbisL1-mrna-12721, nbisL1-mrna-12722, nbisL1-mrna-12723, nbisL1-mrna-12724, nbisL1-mrna-20643, nbisL1-mrna-6633, nbisL1-mrna-6973
Salicaceae	Populus euphratica	7	populus_peu03482, populus_peu27801, populus_peu28876 ... populus_peu30275, populus_peu30566, populus_peu31740, populus_peu34322
Solanaceae	Lycium barbarum	9	gene-LOC132603858, gene-LOC132631808, gene-LOC132633009 ... gene-LOC132634991, gene-LOC132639068, gene-LOC132645637, gene-LOC132645638, gene-LOC132645639, gene-LOC132645640
Solanaceae	Solanum chilense	6	SOLCI002559400, SOLCI002559500, SOLCI004080500 ... SOLCI004571300, SOLCI004797500, SOLCI007115800
Solanaceae	Solanum pennellii	7	gene-LOC107001949, gene-LOC107006635, gene-LOC107009850 ... gene-LOC107009862, gene-LOC107013793, gene-LOC107021365, gene-LOC107027318
Tamaricaceae	Reaumuria soongarica	6	STRG.29203_chr11_+, gene_11143, gene_14129, gene_15148 ... gene_485, gene_5190
Tamaricaceae	Tamarix chinensis	1	TC03G2728
Zosteraceae	Zostera marina	3	Zosma01g41420.v3.1, Zosma02g06390.v3.1, Zosma02g24860.v3.1