Basic Information
Locus ID:
evm.TU.LG01.2228
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
MADS-box protein SOC1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 44888945 | 44896900 | + | evm.TU.LG01.2228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 25,983.62 Da | 64.46 | 80.54 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 3 | 72 | 2.32326E-42 | IPR033896 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | 1.5E-24 | IPR002100 |
| Pfam | PF01486 | K-box region | 89 | 174 | 2.1E-21 | IPR002487 |
| SUPERFAMILY | SSF55455 | SRF-like | 3 | 79 | 3.14E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 14 | 94 | 1.6E-28 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 2.1E-38 | IPR002100 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.361221 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 90 | 180 | 13.682805 | IPR002487 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 6.1E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 6.1E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 6.1E-28 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 202 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 204 | - | - |
| Coils | Coil | Coil | 124 | 147 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G62165.1 | AGAMOUS-like 42. Encodes a MADS box transcription factor. Expressed in quiescent center. | 0 |
| RefSeq | XP_024040475.1 | MADS-box protein AGL42 [Citrus clementina] | 0 |
| Q9FIS1 | MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1 | 0 | |
| TrEMBL | A7LLT6 | SOC1-like protein 2 OS=Citrus sinensis OX=2711 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology