Basic Information
Locus ID:
evm.TU.LG01.2214
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 44684926 | 44688745 | + | evm.TU.LG01.2214 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 45,226.78 Da | 26.61 | 75.46 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 318 | 0.0069 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 246 | 279 | 0.027 | IPR001680 |
| Pfam | PF00642 | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 91 | 113 | 2.9E-7 | IPR000571 |
| Pfam | PF00400 | WD domain, G-beta repeat | 122 | 158 | 1.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 104 | 407 | 4.03E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 416 | 3.0E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 114 | 204 | 2.4E-9 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 28 | 113 | 5.8E-9 | - |
| SMART | SM00320 | WD40_4 | 198 | 235 | 4.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 323 | 366 | 1.1 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 52 | 0.78 | IPR000571 |
| SMART | SM00320 | WD40_4 | 282 | 319 | 3.8E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 90 | 114 | 4.9E-6 | IPR000571 |
| SMART | SM00320 | WD40_4 | 119 | 158 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 369 | 406 | 8.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 242 | 279 | 0.0031 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 88 | 115 | 15.412772 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 249 | 282 | 9.335602 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 27 | 53 | 10.314491 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 126 | 167 | 14.151034 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 126 | 158 | 11.128319 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 249 | 288 | 12.212779 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 266 | 280 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 145 | 159 | 3.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 306 | 320 | 3.4E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_031280520.1 | zinc finger CCCH domain-containing protein 48-like [Pistacia vera] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067F1Z0 | Zinc finger CCCH domain-containing protein 48 OS=Citrus sinensis OX=2711 GN=CISIN_1g013881mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology