Basic Information
Locus ID:
evm.TU.LG01.2198
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 44449955 | 44461976 | - | evm.TU.LG01.2198 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 108,159.81 Da | 48.53 | 83.49 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15539 | PHD1_AIRE | 590 | 630 | 3.52133E-17 | - |
| Pfam | PF16135 | Tify domain binding domain | 524 | 573 | 4.6E-17 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 591 | 631 | 1.3E-7 | IPR019787 |
| Pfam | PF16135 | Tify domain binding domain | 243 | 298 | 3.8E-13 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 829 | 921 | 1.3E-5 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 675 | 734 | 1.26E-8 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 577 | 632 | 4.32E-15 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 676 | 737 | 2.4E-11 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 577 | 653 | 3.8E-18 | IPR013083 |
| SMART | SM00249 | PHD_3 | 678 | 735 | 0.001 | IPR001965 |
| SMART | SM00249 | PHD_3 | 590 | 631 | 4.3E-11 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 679 | 737 | 8.5021 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 588 | 633 | 10.264299 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 591 | 630 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 451 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 465 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_015389915.1 | uncharacterized protein LOC102626366 isoform X1 [Citrus sinensis] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067EGP6 | PHD-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g001893mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology