Basic Information
Locus ID:
evm.TU.LG01.2194
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
DNA repair protein recA homolog 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 57997886 | 58016127 | + | evm.TU.LG01.2194 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 89,336.24 Da | 34.94 | 89.96 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 479 | 746 | 5.39737E-91 | - |
| CDD | cd00983 | recA | 69 | 389 | 0.0 | IPR013765 |
| Pfam | PF00069 | Protein kinase domain | 476 | 673 | 3.0E-45 | IPR000719 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 72 | 334 | 1.7E-115 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 334 | 390 | 5.36E-18 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 71 | 333 | 3.09E-53 | IPR027417 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 452 | 744 | 7.28E-78 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 549 | 757 | 4.2E-55 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 99 | 398 | 2.7E-100 | IPR027417 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 444 | 548 | 2.6E-34 | - |
| SMART | SM00382 | AAA_5 | 121 | 292 | 4.2E-11 | IPR003593 |
| SMART | SM00220 | serkin_6 | 473 | 737 | 2.8E-37 | IPR000719 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 69 | 389 | 2.9E-142 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 100 | 258 | 27.240704 | IPR020588 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 473 | 750 | 37.134979 | IPR000719 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 263 | 338 | 27.898792 | IPR020587 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 595 | 607 | - | IPR008271 |
| ProSitePatterns | PS00321 | recA signature. | 277 | 285 | - | IPR020584 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 479 | 501 | - | IPR017441 |
| PRINTS | PR00142 | RecA protein signature | 191 | 220 | 9.8E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 229 | 258 | 9.8E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 274 | 302 | 9.8E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 309 | 338 | 9.8E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 363 | 380 | 9.8E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 157 | 186 | 9.8E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 70 | 395 | 45.138134 | IPR013765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 772 | 814 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021741976.1 | DNA repair protein recA homolog 1, chloroplastic [Chenopodium quinoa] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9AV41 | DNA repair protein recA homolog 1, chloroplastic OS=Opuntia streptacantha OX=393608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology