Basic Information
Locus ID:
evm.TU.LG01.2172
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Organic cation carnitine transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 57754946 | 57758114 | + | evm.TU.LG01.2172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 54,884.66 Da | 38.49 | 105.27 | 0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07690 | Major Facilitator Superfamily | 346 | 483 | 3.9E-13 | IPR011701 |
| Pfam | PF00083 | Sugar (and other) transporter | 59 | 270 | 2.9E-36 | IPR005828 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 12 | 486 | 4.32E-70 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 20 | 489 | 7.8E-89 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 27 | 480 | 43.173298 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 356 | 371 | - | IPR005829 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13050.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_020539794.1 | organic cation/carnitine transporter 7 isoform X2 [Jatropha curcas] | 0 |
| Q940M4 | Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana OX=3702 GN=OCT7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9UHH8 | MFS domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_14G000300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology