Basic Information
Locus ID:
evm.TU.LG01.2118
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 57108300 | 57109415 | + | evm.TU.LG01.2118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.61 | 42,886.19 Da | 43.05 | 100.27 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07723 | Leucine Rich Repeat | 133 | 156 | 7.0E-4 | IPR013101 |
| Pfam | PF00646 | F-box domain | 3 | 37 | 2.4E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 57 | 208 | 2.75E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 37 | 6.93E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 52 | 311 | 7.7E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 39 | 9.2E-9 | - |
| SMART | SM00256 | fbox_2 | 4 | 42 | 0.0014 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 34 | 10.901672 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58900.3 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_015571091.2 | putative F-box/LRR-repeat protein At5g38386 [Ricinus communis] | 0 |
| Q93ZX6 | F-box/LRR-repeat protein At3g58900 OS=Arabidopsis thaliana OX=3702 GN=At3g58900 PE=2 SV=1 | 0 | |
| TrEMBL | A0A484KWQ4 | F-box domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS8328 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2117, evm.TU.LG01.2118, evm.TU.LG14.1293 |