Basic Information
Locus ID:
evm.TU.LG01.2117
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 57085817 | 57087016 | + | evm.TU.LG01.2117 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 46,674.30 Da | 41.81 | 92.26 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07723 | Leucine Rich Repeat | 153 | 176 | 8.3E-4 | IPR013101 |
| Pfam | PF00646 | F-box domain | 17 | 52 | 7.0E-8 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 129 | 211 | 2.35E-5 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 14 | 52 | 1.27E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 55 | 1.3E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 74 | 325 | 5.2E-6 | IPR032675 |
| SMART | SM00256 | fbox_2 | 19 | 58 | 0.0071 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 49 | 9.894885 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58860.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_023902049.1 | F-box/LRR-repeat protein At3g58900-like [Quercus suber] | 0 |
| Q9LXR6 | Putative F-box protein At3g58860 OS=Arabidopsis thaliana OX=3702 GN=At3g58860 PE=4 SV=1 | 0 | |
| TrEMBL | A0A484KWQ4 | F-box domain-containing protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS8328 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG01.2117, evm.TU.LG01.2118, evm.TU.LG14.1293 |