Basic Information
Locus ID:
evm.TU.LG01.2020
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
protein polyubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 55385723 | 55386487 | + | evm.TU.LG01.2020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 28,605.99 Da | 53.50 | 87.80 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 200 | 247 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 182 | 251 | 6.06E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 178 | 254 | 1.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 201 | 246 | 7.9E-8 | IPR001841 |
| SMART | SM00744 | ringv_2 | 200 | 247 | 0.0069 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 201 | 247 | 12.297489 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_042021158.1 | E3 ubiquitin-protein ligase CHFR-like [Salvia splendens] | 0 |
| Q0II22 | E3 ubiquitin-protein ligase RNF126 OS=Bos taurus OX=9913 GN=RNF126 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6B2L0S8 | RING-type domain-containing protein OS=Arcella intermedia OX=1963864 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G05910.1 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG01.2020, evm.TU.LG01.2613, evm.TU.LG13.1520 ... |