Basic Information
Locus ID:
evm.TU.LG01.199
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1781780 | 1791560 | + | evm.TU.LG01.199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.46 | 93,166.64 Da | 40.60 | 77.59 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 734 | 795 | 0.0040145 | - |
| Pfam | PF16135 | Tify domain binding domain | 240 | 295 | 4.0E-13 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 437 | 485 | 3.0E-13 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 501 | 542 | 3.1E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 733 | 822 | 1.08E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 573 | 637 | 1.09E-6 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 497 | 545 | 4.53E-15 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 722 | 824 | 1.7E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 493 | 552 | 4.9E-16 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 571 | 634 | 1.2E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 575 | 632 | 5.1E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 501 | 542 | 4.7E-13 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 573 | 634 | 8.7513 | IPR019787 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 499 | 544 | 10.388899 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 502 | 541 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 576 | 631 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 378 | 393 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 405 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_010684186.1 | uncharacterized protein LOC104898779 isoform X2 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A7C9B102 | PHD-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology