Basic Information
Locus ID:
evm.TU.LG01.1937
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 54036858 | 54037535 | + | evm.TU.LG01.1937 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 25,105.85 Da | 46.05 | 73.29 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 189 | 214 | 4.91796E-6 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 176 | 219 | 3.2E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 176 | 221 | 1.14E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 126 | 223 | 7.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 177 | 214 | 4.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 177 | 215 | 11.013978 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 192 | 201 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 44 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| Coils | Coil | Coil | 136 | 163 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03965.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010686766.2 | uncharacterized protein LOC104900931 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | I1MR22 | RING-type domain-containing protein OS=Glycine max OX=3847 GN=100792613 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology