Basic Information
Locus ID:
evm.TU.LG01.1902
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 38120174 | 38121436 | - | evm.TU.LG01.1902 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 46,358.49 Da | 47.03 | 101.91 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 52 | 7.8319E-24 | - |
| Pfam | PF04564 | U-box domain | 6 | 77 | 9.8E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 99 | 405 | 2.3E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 82 | 6.48E-27 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 86 | 412 | 7.6E-20 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | 7.1E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 75 | 1.4E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 82 | 36.985638 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52450.1 | plant U-box 22. Encodes a cytoplasmically localized U-box domain E3 ubiquitin ligase protein that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_006481606.1 | E3 ubiquitin-protein ligase PUB22-like [Citrus sinensis] | 0 |
| Q9SVC6 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FTF7 | RING-type E3 ubiquitin transferase OS=Citrus sinensis OX=2711 GN=CISIN_1g014913mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology