Basic Information
Locus ID:
evm.TU.LG01.1884
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 37459054 | 37472596 | - | evm.TU.LG01.1884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 101,327.41 Da | 43.87 | 81.48 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 704 | 880 | 1.34888E-56 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 288 | 879 | 6.5E-81 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 286 | 881 | 1.96E-107 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 669 | 885 | 1.3E-55 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 272 | 523 | 8.9E-64 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 288 | 882 | 56.454342 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 289 | 304 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 825 | 842 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_024037283.1 | ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Citrus clementina] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2H5MZB5 | Ubiquitin carboxyl-terminal hydrolase OS=Citrus unshiu OX=55188 GN=CUMW_004570 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology