Basic Information
Locus ID:
evm.TU.LG01.1770
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 50344972 | 50346912 | - | evm.TU.LG01.1770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 69,536.40 Da | 36.14 | 101.87 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 165 | 221 | 6.2E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 454 | 512 | 8.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 64 | 6.7E-8 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 238 | 297 | 4.5E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 18 | 278 | 1.16E-52 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 222 | 594 | 5.89E-72 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 346 | 620 | 5.9E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 275 | 4.6E-29 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 21 | 181 | 5.2E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 276 | 345 | 3.2E-13 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 475 | 499 | 5.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 571 | 594 | 220.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 332 | 356 | 6.6 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 114 | 138 | 310.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 187 | 211 | 36.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 284 | 307 | 96.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 236 | 260 | 130.0 | IPR003591 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75820.1 | Leucine-rich receptor-like protein kinase family protein. Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). CLV3 peptide binds directly CLV1 ectodomain. | 0 |
| RefSeq | XP_016687668.2 | receptor protein kinase CLAVATA1 [Gossypium hirsutum] | 0 |
| Q9SYQ8 | Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana OX=3702 GN=CLV1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A7C9AFS3 | LRRNT_2 domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22125, gene_22126 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011420 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl41641, Sgl46440 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011472 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0003080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30049220 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G21477 |
| Casuarinaceae | Casuarina equisetifolia | 4 | Ceq01G0192, Ceq01G0193, Ceq01G0196, Ceq03G0864 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl01G0214, Cgl01G0215, Cgl03G0944 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.1770, evm.TU.LG14.985 |