Basic Information
Locus ID:
evm.TU.LG01.1743
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 49743247 | 49744584 | + | evm.TU.LG01.1743 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.92 | 49,496.09 Da | 41.29 | 105.51 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 31 | 73 | 4.32373E-25 | - |
| Pfam | PF04564 | U-box domain | 27 | 98 | 7.7E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 23 | 103 | 3.77E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 146 | 424 | 8.38E-11 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 104 | 2.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 115 | 425 | 9.7E-11 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 30 | 93 | 5.5E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 26 | 100 | 33.102375 | IPR003613 |
| Coils | Coil | Coil | 130 | 150 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021719575.1 | U-box domain-containing protein 20-like [Chenopodium quinoa] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LKZ9 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology