Basic Information
Locus ID:
evm.TU.LG01.169
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 2070026 | 2074603 | - | evm.TU.LG01.169 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 46,315.40 Da | 52.71 | 68.68 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 262 | 337 | 4.68556E-33 | - |
| CDD | cd12352 | RRM1_TIA1_like | 58 | 128 | 4.90364E-37 | - |
| CDD | cd12619 | RRM2_PUB1 | 142 | 216 | 5.69502E-53 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 143 | 213 | 1.3E-17 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 58 | 124 | 2.3E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 330 | 1.5E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 40 | 134 | 4.57E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 135 | 225 | 6.31E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 254 | 346 | 2.01E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 137 | 3.1E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 138 | 239 | 1.3E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 240 | 341 | 4.1E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 263 | 333 | 1.4E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 57 | 126 | 4.1E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 142 | 215 | 9.3E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 337 | 14.726371 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 56 | 130 | 15.408587 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 141 | 219 | 17.148237 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 260 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_031262075.1 | oligouridylate-binding protein 1B isoform X2 [Pistacia vera] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FFM6 | Oligouridylate-binding protein 1-like OS=Citrus sinensis OX=2711 GN=CISIN_1g014230mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology