Basic Information
Locus ID:
evm.TU.LG01.1653
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 47407743 | 47422115 | - | evm.TU.LG01.1653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 132,836.41 Da | 49.30 | 75.72 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1054 | 1161 | 2.5864E-54 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 472 | 781 | 4.02034E-87 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 490 | 859 | 8.1E-66 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 897 | 933 | 7.2E-5 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1051 | 1151 | 7.7E-17 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 894 | 958 | 2.98E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 790 | 1208 | 6.91E-59 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 457 | 781 | 3.64E-44 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 449 | 628 | 4.0E-22 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 796 | 1209 | 2.2E-64 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 890 | 949 | 6.5E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 629 | 793 | 8.5E-29 | IPR038718 |
| SMART | SM00487 | ultradead3 | 468 | 760 | 6.5E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1068 | 1151 | 7.1E-20 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1045 | 1204 | 16.075897 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 897 | 933 | 10.084539 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 487 | 743 | 13.093204 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 912 | 921 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 658 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 535 | 555 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021740504.1 | helicase-like transcription factor CHR28 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QNB3 | DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_160060 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology