Basic Information
Locus ID:
evm.TU.LG01.1614
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 46541055 | 46551594 | - | evm.TU.LG01.1614 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 106,699.19 Da | 59.81 | 76.60 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 229 | 339 | 1.1E-6 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 713 | 777 | 8.1E-9 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 107 | 365 | 8.96E-21 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 845 | 923 | 4.96E-12 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 847 | 932 | 2.3E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 109 | 371 | 8.6E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 710 | 787 | 3.2E-6 | - |
| SMART | SM00358 | DRBM_3 | 714 | 778 | 1.5E-8 | IPR014720 |
| SMART | SM00577 | forpap2 | 172 | 348 | 5.5E-10 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 847 | 915 | 0.0068 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 713 | 779 | 12.3538 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 113 | 361 | 15.897482 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 846 | 916 | 11.479855 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 702 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 675 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 713 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 919 | 964 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010686545.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Beta vulgaris subsp. vulgaris] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7C8ZZN2 | protein-serine/threonine phosphatase OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology