Basic Information
Locus ID:
evm.TU.LG01.1606
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 46344378 | 46350936 | + | evm.TU.LG01.1606 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.93 | 78,335.85 Da | 46.56 | 87.50 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 5 | 198 | 9.88299E-43 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 8.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 99 | 115 | 0.071 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 173 | 197 | 0.14 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.039 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 544 | 700 | 5.6E-44 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 119 | 157 | 2.7E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 238 | 7.88E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 98 | 4.3E-20 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 99 | 296 | 4.3E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 118 | 157 | 8.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 4.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 115 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 160 | 198 | 0.53 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 102 | 124 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 14.251289 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 125 | 166 | 15.019908 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 125 | 160 | 11.866497 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 144 | 158 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 102 | 116 | 9.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 144 | 158 | 9.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 73 | 87 | 9.8E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 703 | 14.292026 | IPR026962 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_021740494.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Chenopodium quinoa] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9QAM5 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_206220 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology