Basic Information
Locus ID:
evm.TU.LG01.1585
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
Peroxisome biogenesis protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 23088675 | 23132761 | - | evm.TU.LG01.1585 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.14 | 123,344.46 Da | 44.39 | 98.73 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 863 | 1000 | 1.84532E-22 | - |
| CDD | cd00009 | AAA | 577 | 729 | 7.74639E-13 | - |
| Pfam | PF09262 | Peroxisome biogenesis factor 1, N-terminal | 97 | 170 | 3.2E-24 | IPR015342 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 871 | 998 | 1.3E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 1023 | 1066 | 3.0E-10 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 584 | 729 | 8.9E-18 | IPR003959 |
| SUPERFAMILY | SSF54585 | Cdc48 domain 2-like | 92 | 170 | 6.54E-22 | IPR029067 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 571 | 789 | 3.83E-30 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 833 | 1100 | 9.38E-60 | IPR027417 |
| SUPERFAMILY | SSF50692 | ADC-like | 8 | 89 | 1.69E-8 | IPR009010 |
| Gene3D | G3DSA:3.10.330.10 | - | 92 | 171 | 1.6E-25 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 831 | 1095 | 5.3E-86 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 544 | 731 | 1.0E-23 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 1002 | 1082 | 5.3E-86 | - |
| Gene3D | G3DSA:2.40.40.20 | - | 2 | 88 | 5.3E-5 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 732 | 827 | 4.5E-7 | - |
| SMART | SM00382 | AAA_5 | 867 | 1003 | 3.9E-15 | IPR003593 |
| SMART | SM00382 | AAA_5 | 579 | 732 | 1.4E-11 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 971 | 989 | - | IPR003960 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08470.1 | peroxisome 1. an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals. | 0 |
| RefSeq | XP_006448771.1 | peroxisome biogenesis protein 1 isoform X1 [Citrus clementina] | 0 |
| Q9FNP1 | Peroxisomal ATPase PEX1 OS=Arabidopsis thaliana OX=3702 GN=PEX1 PE=1 SV=2 | 0 | |
| TrEMBL | V4UI74 | Peroxin-1 OS=Citrus clementina OX=85681 GN=CICLE_v10014090mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg12047 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_25098, gene_25100 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19308, Sbi_jg43876 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18047 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014624 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl65601, Sgl69904 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014450, gene:ENSEOMG00000019828 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0001070, CQ.Regalona.r1.2BG0002130 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30107880, pistato.v30195380, pistato.v30295310 |
| Apiaceae | Apium graveolens | 1 | Ag3G01834 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G000960 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719364 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.2379.V1.1, AsparagusV1_06.88.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G28551 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08470.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012497m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34430.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g052760.2N, BniB08g003830.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G1659 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G1718 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g05620 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0970s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g20310 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4664 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1585 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00019879, Pov_00023082, Pov_00038518 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05395 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.2355, BH08.2505, CH08.2692 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0640400, gene-QOZ80_8BG0669000 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.5HG0495920.1, HORVU.MOREX.r3.5HG0495930.1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030679, gene-QYE76_036245 |
| Poaceae | Oryza coarctata | 1 | Oco15G014430 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g44240.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G224400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403396 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr20G003110, Chr20G003120, Chr29G000510 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G480200, Tel7E01G479600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC5BG048630, gene_TRIDC7AG036330 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G301500.1, TraesCS5B02G299200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb176300_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-42858 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23424 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.896, evm.TU.LG09.1078 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g14830 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1214 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-6856, nbisL1-mrna-6919 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-5924 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17021 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000004l.358 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004222 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16356 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18054 |
| Salicaceae | Populus euphratica | 1 | populus_peu02837 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627175 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017996 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0572 |
| Zosteraceae | Zostera marina | 1 | Zosma06g18910.v3.1 |