Basic Information
Locus ID:
evm.TU.LG01.155
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 1329080 | 1331194 | - | evm.TU.LG01.155 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 77,356.65 Da | 35.60 | 83.17 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 219 | 257 | 7.79892E-5 | IPR018392 |
| Pfam | PF01476 | LysM domain | 221 | 264 | 9.7E-5 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 428 | 673 | 1.1E-37 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 377 | 675 | 5.82E-63 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 209 | 278 | 7.3E-8 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 476 | 698 | 2.6E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 381 | 474 | 1.1E-13 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 219 | 263 | 10.316498 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 389 | 677 | 31.255234 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_021856141.1 | protein LYK5 isoform X1 [Spinacia oleracea] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7C9ALC6 | Protein kinase domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology