Basic Information
Locus ID:
evm.TU.LG01.1419
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 18282529 | 18285007 | - | evm.TU.LG01.1419 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 40,164.85 Da | 45.53 | 65.69 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 305 | 345 | 4.66423E-29 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 304 | 350 | 9.6E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 351 | 4.71E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 290 | 355 | 4.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 306 | 344 | 2.7E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 279 | 356 | 4.3E-8 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 16 | 71 | 1400.0 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 306 | 345 | 11.146755 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09770.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031284378.1 | probable E3 ubiquitin-protein ligase LOG2 [Pistacia vera] | 0 |
| Q9S752 | Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana OX=3702 GN=LOG2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JYY2 | RING-type E3 ubiquitin transferase OS=Jatropha curcas OX=180498 GN=JCGZ_16496 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology