Basic Information
Locus ID:
evm.TU.LG01.1378
Species & Taxonomic ID:
Nitraria sibirica & 357931
Short Name:
UPL4
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 17573282 | 17580347 | + | evm.TU.LG01.1378 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 168,563.75 Da | 46.22 | 91.71 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1115 | 1511 | 2.33247E-117 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1161 | 1513 | 7.6E-81 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1108 | 1506 | 1.44E-97 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 106 | 535 | 1.35E-33 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 91 | 541 | 3.6E-50 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1397 | 1511 | 1.5E-34 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1057 | 1290 | 8.7E-42 | - |
| SMART | SM00119 | hect_3 | 1125 | 1513 | 1.8E-101 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1127 | 1513 | 62.086121 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 100 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
| Coils | Coil | Coil | 998 | 1018 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_031268299.1 | E3 ubiquitin-protein ligase UPL4 isoform X2 [Pistacia vera] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | V4ST42 | HECT-type E3 ubiquitin transferase OS=Citrus clementina OX=85681 GN=CICLE_v10010897mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology