Basic Information
Locus ID:
evm.TU.LG01.1253
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 15646648 | 15659929 | - | evm.TU.LG01.1253 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 106,031.12 Da | 46.55 | 74.64 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 545 | 594 | 3.8E-14 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 334 | 387 | 2.7E-12 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 834 | 924 | 1.21E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 608 | 657 | 1.79E-12 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 684 | 738 | 1.15E-6 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 780 | 953 | 7.9E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 600 | 678 | 2.9E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 681 | 743 | 1.3E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 612 | 653 | 4.1E-6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 684 | 741 | 6.2E-5 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 610 | 655 | 9.4277 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 791 | 951 | 9.845712 | IPR000182 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 682 | 743 | 8.626699 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 613 | 652 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 685 | 740 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 189 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37520.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_044503479.1 | uncharacterized protein LOC123224049 [Mangifera indica] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | V4S4H6 | PHD-type domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10011054mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology