Basic Information
Locus ID:
evm.TU.LG01.1240
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 15501998 | 15505901 | + | evm.TU.LG01.1240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 110,001.18 Da | 52.72 | 63.89 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 546 | 582 | 4.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 435 | 467 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 724 | 758 | 0.044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 588 | 624 | 0.0043 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 433 | 761 | 5.04E-53 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 370 | 534 | 2.9E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 535 | 796 | 2.1E-48 | IPR015943 |
| SMART | SM00320 | WD40_4 | 585 | 624 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 544 | 582 | 1.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 717 | 758 | 0.0071 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 468 | 4.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 627 | 665 | 5.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 676 | 716 | 32.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 436 | 470 | 11.312864 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 551 | 585 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 591 | 625 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 551 | 591 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 591 | 625 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 737 | 767 | 8.804123 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 436 | 477 | 14.117617 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 569 | 583 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 455 | 469 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 611 | 625 | 2.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 569 | 583 | 2.3E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 455 | 469 | 2.3E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 414 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 938 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 525 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 414 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_038720722.1 | uncharacterized protein LOC120013117 [Tripterygium wilfordii] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7CSZ7 | WD-40 repeat family protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G00042 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology