Basic Information
Locus ID:
evm.TU.LG01.1199
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 14948883 | 14950016 | + | evm.TU.LG01.1199 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 42,137.85 Da | 87.05 | 61.30 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 186 | 227 | 3.87637E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 252 | 362 | 1.6E-40 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 185 | 227 | 7.9E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 7 | 40 | 3.8E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 166 | 233 | 4.48E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 233 | 5.6E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 186 | 226 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 186 | 227 | 12.046688 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 80 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_042941125.1 | E3 ubiquitin-protein ligase RDUF1-like [Carya illinoinensis] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7HNR1 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_016470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology