Basic Information
Locus ID:
evm.TU.LG01.105
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 1214961 | 1221043 | - | evm.TU.LG01.105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.41 | 22,171.85 Da | 43.80 | 78.28 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56235 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 40 | 118 | 6.31E-12 | IPR029055 |
| Gene3D | G3DSA:3.60.20.10 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 33 | 83 | 1.2E-5 | IPR029055 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G27430.1 | N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein. Encodes 20S proteasome beta subunit PBB1 (PBB1). | 0 |
| RefSeq | XP_038693167.1 | proteasome subunit beta type-7-A [Tripterygium wilfordii] | 0 |
| O23710 | Proteasome subunit beta type-7-A OS=Arabidopsis thaliana OX=3702 GN=PBB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B5YVN4 | Proteasome subunit beta OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30944 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13363 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027286 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g135740 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12660, Sbi_jg53264 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8644 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010367, GOSA_00010370 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl33601, Sgl38904, Sgl39152 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000229, gene:ENSEOMG00000001192 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0025130 |
| Apiaceae | Apium graveolens | 1 | Ag4G01364 |
| Arecaceae | Cocos nucifera | 1 | COCNU_09G005460 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723997 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_07.2330.V1.1, AsparagusV1_07.2332.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G04508 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G35520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024245m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g33300.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g087580.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0048 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0048 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno09g00100 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g03020 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-6932 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.105, evm.TU.LG02.2882 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00002291 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G06053 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.2854, BH03.3021, CH03.3210 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0503940.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007153, gene-QYE76_007154 |
| Poaceae | Oryza coarctata | 2 | Oco17G011340, Oco18G011230 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g33250.1, LOC_Os09g37930.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_02G083600, gene-BS78_02G266400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0700777, Pt_Chr0700856 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr10G006660, Chr11G012670 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG055760 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G352800.1, TraesCS5B02G355000.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb104330_P001, Zm00001eb104340_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-52805 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g29931 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG06.952, evm.TU.LG11.305, evm.TU.LG11.307 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g06690 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.23 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-127, nbisL1-mrna-162 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-5907, nbisL1-mrna-5961 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5837 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.1200 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006813 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6609 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-2492 |
| Salicaceae | Populus euphratica | 2 | populus_peu14034, populus_peu14035 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621723 |
| Solanaceae | Solanum chilense | 7 | SOLCI000312100, SOLCI000501000, SOLCI001636400 ... |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009320, gene-LOC107010216 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.25133_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0836 |
| Zosteraceae | Zostera marina | 1 | Zosma06g11810.v3.1 |