Basic Information
Locus ID:
evm.TU.LG01.1039
Species & Taxonomic ID:
Nitraria sibirica & 357931
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG01 | 12573756 | 12580276 | + | evm.TU.LG01.1039 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 90,976.28 Da | 52.99 | 83.51 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 644 | 703 | 3.02243E-11 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 641 | 703 | 7.2E-8 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 249 | 359 | 2.4E-6 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 128 | 390 | 8.65E-18 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 641 | 704 | 1.36E-13 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 639 | 709 | 2.1E-11 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 128 | 407 | 4.8E-26 | IPR023214 |
| SMART | SM00577 | forpap2 | 192 | 368 | 9.8E-13 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 640 | 704 | 4.7E-11 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 381 | 14.933939 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 639 | 705 | 13.883207 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 757 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 735 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 818 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 756 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_044482904.1 | RNA polymerase II C-terminal domain phosphatase-like 2 [Mangifera indica] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A067DXN7 | protein-serine/threonine phosphatase OS=Citrus sinensis OX=2711 GN=CISIN_1g003896mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology