Basic Information
Locus ID:
evm.TU.Contig19.2
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
WD domain-containing protein. Source PGD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig19 | 3200 | 4263 | + | evm.TU.Contig19.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 24,459.57 Da | 39.29 | 74.10 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 35 | 206 | 2.82E-14 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 28 | 109 | 2.1E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 110 | 216 | 2.1E-33 | IPR015943 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 73 | 95 | 9.97376 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002952853.1 | hypothetical protein VOLCADRAFT_81979 [Volvox carteri f. nagariensis] | 0 |
| Q5M7F6 | Dynein axonemal assembly factor 10 OS=Xenopus laevis OX=8355 GN=dnaaf10 PE=2 SV=1 | 0 | |
| TrEMBL | W2NFU9 | WD_REPEATS_REGION domain-containing protein OS=Phytophthora parasitica OX=4792 GN=L914_07787 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0068s00020.v1.0 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.Contig19.2 |