Basic Information
Locus ID:
evm.TU.Contig12.9
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
E3 ubiquitin ligase. Source PGD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig12 | 28550 | 28933 | + | evm.TU.Contig12.9 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 11,528.32 Da | 63.66 | 84.33 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 17 | 57 | 6.9E-7 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 9 | 76 | 9.77E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 97 | 5.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 17 | 57 | 0.0011 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 17 | 58 | 12.1057 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 32 | 41 | - | IPR017907 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| Q6FPI4 | Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138) OX=284593 GN=RAD18 PE=3 SV=1 | 0 | |
| TrEMBL | F0WAJ9 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Albugo laibachii Nc14 OX=890382 GN=AlNc14C46G3723 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0392s00004.v1.0 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.Contig12.26, evm.TU.Contig12.9 |