Basic Information
Locus ID:
evm.TU.Contig12.26
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
single-stranded DNA-dependent ATPase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig12 | 88903 | 89872 | - | evm.TU.Contig12.26 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.98 | 30,121.67 Da | 56.24 | 55.23 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 210 | 235 | 9.42E-5 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 207 | 258 | 1.1E-5 | - |
| SMART | SM00547 | zf_4 | 211 | 235 | 2.1E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 209 | 238 | 8.896765 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 213 | 232 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TrEMBL | F0WAJ9 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Albugo laibachii Nc14 OX=890382 GN=AlNc14C46G3723 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0392s00004.v1.0 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.Contig12.26, evm.TU.Contig12.9 |