Basic Information
Locus ID:
evm.TU.Contig12.23
Species & Taxonomic ID:
Portulaca oleracea & 46147
Genome Assembly:
GWHCBIU00000000
Description:
Wd-repeat protein. Source PGD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Contig12 | 82539 | 84015 | + | evm.TU.Contig12.23 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 34,399.40 Da | 46.06 | 80.45 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 28 | 70 | 5.7E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 118 | 155 | 4.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 21 | 298 | 1.45E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 103 | 310 | 2.5E-22 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 102 | 1.0E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 114 | 155 | 7.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 251 | 380.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 255 | 294 | 0.046 | IPR001680 |
| SMART | SM00320 | WD40_4 | 16 | 55 | 1.1E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 122 | 164 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 23 | 64 | 9.372231 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 262 | 303 | 8.637032 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 122 | 159 | 10.601049 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 142 | 156 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024522786.1 | protein will die slowly [Selaginella moellendorffii] | 0 |
| TrEMBL | A0A8K1CGK2 | ANAPC4_WD40 domain-containing protein OS=Pythium oligandrum OX=41045 GN=Poli38472_010830 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0052s00012.v1.0 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.Contig12.23 |