Basic Information
Locus ID:
evm.TU.60432.1
Species & Taxonomic ID:
Bruguiera sexangula & 98584
Genome Assembly:
GCA_020141445.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 60432 | 3735 | 10517 | + | evm.TU.60432.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 100,804.90 Da | 39.68 | 80.70 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 209 | 1.82355E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 41 | 77 | 1.0E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 83 | 119 | 6.0E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 123 | 161 | 1.9E-6 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 770 | 913 | 1.4E-49 | IPR028021 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 245 | 1.01E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 269 | 3.5E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 122 | 161 | 9.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 164 | 202 | 0.95 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 35 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 38 | 77 | 8.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 80 | 119 | 1.2E-11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 45 | 86 | 15.755108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 45 | 79 | 12.393768 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 170 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 3 | 44 | 9.309238 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 164 | 11.840134 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 3 | 44 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 87 | 128 | 17.693363 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 87 | 124 | 13.685579 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 106 | 120 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 148 | 162 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 148 | 162 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 64 | 78 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 106 | 120 | 1.3E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 917 | 15.806678 | IPR026962 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_024436895.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 isoform X2 [Populus trichocarpa] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L2P7 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology