Basic Information
Locus ID:
evm.TU.60431.1
Species & Taxonomic ID:
Bruguiera sexangula & 98584
Genome Assembly:
GCA_020141445.1
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 60431 | 2921 | 10779 | + | evm.TU.60431.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 107,633.79 Da | 40.51 | 81.27 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 8 | 260 | 1.09748E-62 | - |
| Pfam | PF13925 | con80 domain of Katanin | 819 | 977 | 5.1E-53 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 2.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 6.5E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 43 | 0.062 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 1.1E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 6 | 296 | 2.72E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 131 | 5.5E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 132 | 265 | 1.1E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 9.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 8.4E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.95 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 1.2E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.096 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 0.1 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.393768 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 14.886235 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.685579 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.693363 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.755108 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 95 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 9.439068 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.840134 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 1.6E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 1.6E-7 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 980 | 19.503292 | IPR026962 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61210.3 | - | 0 |
| RefSeq | XP_006377307.1 | katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.3 isoform X1 [Populus trichocarpa] | 0 |
| F4HTH8 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.2 OS=Arabidopsis thaliana OX=3702 GN=KTN80.2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2L2P7 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology