Basic Information
Locus ID:
evm.TU.60387.1
Species & Taxonomic ID:
Bruguiera sexangula & 98584
Genome Assembly:
GCA_020141445.1
Description:
Zn-finger in Ran binding protein and others
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 60387 | 135 | 1785 | + | evm.TU.60387.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 53,656.79 Da | 59.06 | 41.98 | -1.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 12 | 31 | 1.1E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 37 | 64 | 9.3E-5 | IPR001876 |
| Gene3D | G3DSA:4.10.1060.10 | - | 8 | 33 | 1.0E-7 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 34 | 66 | 3.1E-8 | - |
| SMART | SM00547 | zf_4 | 11 | 29 | 6.1 | IPR001876 |
| SMART | SM00547 | zf_4 | 38 | 62 | 0.037 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 36 | 65 | 9.167777 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 40 | 59 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 152 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 166 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 417 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 199 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 431 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_024457208.1 | uncharacterized protein LOC18098784 [Populus trichocarpa] | 0 |
| TrEMBL | A0A2P2IUY3 | DNA polymerase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology