Basic Information
Locus ID:
evm.TU.60360.3
Species & Taxonomic ID:
Bruguiera sexangula & 98584
Genome Assembly:
GCA_020141445.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 60360 | 5737 | 8705 | - | evm.TU.60360.3 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 25,739.58 Da | 22.73 | 75.73 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 53 | 120 | 8.79212E-32 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 53 | 119 | 4.3E-25 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 54 | 119 | 5.8E-27 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 47 | 125 | 8.7E-32 | IPR016135 |
| SMART | SM00212 | ubc_7 | 2 | 131 | 3.0E-14 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 135 | 23.058655 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 61 | 76 | - | IPR023313 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G08690.1 | ubiquitin-conjugating enzyme 11. | 0 |
| RefSeq | XP_022866477.1 | ubiquitin-conjugating enzyme E2-17 kDa-like [Olea europaea var. sylvestris] | 0 |
| P35134 | Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana OX=3702 GN=UBC11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A834YR96 | UBC core domain-containing protein OS=Tetracentron sinense OX=13715 GN=HHK36_024030 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60359.3, evm.TU.60360.3 |