Basic Information
Locus ID:
evm.TU.49335.1
Species & Taxonomic ID:
Bruguiera sexangula & 98584
Genome Assembly:
GCA_020141445.1
Description:
Protein transport protein Sec24-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| 49335 | 100 | 1405 | + | evm.TU.49335.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.58 | 35,811.14 Da | 35.95 | 105.08 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04815 | Sec23/Sec24 helical domain | 159 | 250 | 2.7E-13 | IPR006900 |
| SUPERFAMILY | SSF81811 | Helical domain of Sec23/24 | 159 | 254 | 1.23E-16 | IPR036175 |
| SUPERFAMILY | SSF81995 | beta-sandwich domain of Sec23/24 | 34 | 82 | 1.86E-9 | - |
| SUPERFAMILY | SSF82754 | C-terminal, gelsolin-like domain of Sec23/24 | 273 | 318 | 9.15E-5 | IPR036180 |
| Gene3D | G3DSA:2.60.40.1670 | - | 28 | 94 | 2.8E-11 | - |
| Gene3D | G3DSA:3.40.20.10 | Severin | 272 | 323 | 2.0E-5 | IPR029006 |
| Gene3D | G3DSA:1.20.120.730 | Sec23/Sec24 helical domain | 113 | 271 | 6.2E-24 | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07100.1 | Sec23/Sec24 protein transport family protein. Encodes SEC24a/ERMO2. Required for endoplasmic reticulum (ER) morphology. | 0 |
| RefSeq | XP_021606385.2 | protein transport protein Sec24-like At3g07100 [Manihot esculenta] | 0 |
| Q9SFU0 | Protein transport protein SEC24 A OS=Arabidopsis thaliana OX=3702 GN=SEC24A PE=1 SV=2 | 0 | |
| TrEMBL | A0A2P2ISM3 | Protein transport protein Sec24-like At3g07100 OS=Rhizophora mucronata OX=61149 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Thinopyrum elongatum | 5 | Tel2E01G041700, Tel2E01G041800, Tel2E01G041900 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.49335.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19638 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22614 |