Basic Information
Locus ID:
contig69446842G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| contig69446842 | 150 | 1028 | - | contig69446842G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 31,130.86 Da | 65.57 | 68.56 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 244 | 281 | 2.96029E-9 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 242 | 285 | 1.4E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 243 | 288 | 1.3E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 208 | 292 | 5.9E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 244 | 281 | 7.4E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 244 | 282 | 10.881201 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 32 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 188 | - | - |
| Coils | Coil | Coil | 212 | 233 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_008792900.2 | uncharacterized protein LOC103709379 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B7C6R0 | uncharacterized protein LOC103709379 OS=Phoenix dactylifera OX=42345 GN=LOC103709379 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology