Basic Information
Locus ID:
contig69389235G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| contig69389235 | 6 | 2097 | + | contig69389235G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 28,684.38 Da | 71.37 | 77.43 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 37 | 82 | 6.59735E-25 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 39 | 80 | 2.9E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 93 | 8.11E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 3 | 96 | 1.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 39 | 80 | 1.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 39 | 81 | 13.448223 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 54 | 63 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_010934828.1 | E3 ubiquitin-protein ligase RMA1H1 [Elaeis guineensis] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9S7R1 | RING-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105054897 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology