Basic Information
Locus ID:
contig69362463G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| contig69362463 | 145 | 1713 | + | contig69362463G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 31,107.50 Da | 38.05 | 88.30 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 202 | 240 | 1.3E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 118 | 244 | 1.27E-22 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 93 | 273 | 3.1E-53 | IPR015943 |
| SMART | SM00320 | WD40_4 | 109 | 147 | 5.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 158 | 197 | 9.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 240 | 2.5E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 207 | 242 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 207 | 242 | 12.145943 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 227 | 241 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.2 | - | 0 |
| RefSeq | XP_010924641.1 | protein SPA1-RELATED 3 [Elaeis guineensis] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9RD59 | protein SPA1-RELATED 3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105047425 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology