Basic Information
Locus ID:
contig69358227G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| contig69358227 | 1063 | 1963 | - | contig69358227G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 27,238.64 Da | 52.32 | 95.92 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 21 | 204 | 2.0E-46 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 15 | 238 | 6.29E-52 | IPR036041 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 167 | 240 | 5.9E-5 | IPR016139 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 165 | 5.6E-47 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 155 | 175 | 3.1E-17 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 124 | 138 | 3.1E-17 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 20 | 33 | 3.1E-17 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 187 | 204 | 3.1E-17 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 66 | 81 | 3.1E-17 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_052195019.1 | uncharacterized protein LOC127803052 [Diospyros lotus] | 0 |
| P28522 | Ribosome-inactivating protein OS=Zea mays OX=4577 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SCI8 | uncharacterized protein LOC105059301 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105059301 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology