Basic Information
Locus ID:
contig69229602G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| contig69229602 | 347 | 1285 | - | contig69229602G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 32,838.06 Da | 64.64 | 80.13 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 102 | 145 | 2.66225E-20 | - |
| Pfam | PF13639 | Ring finger domain | 102 | 145 | 4.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 82 | 151 | 4.01E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 150 | 3.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 103 | 144 | 4.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 103 | 145 | 12.592549 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 291 | 312 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010917352.1 | RING-H2 finger protein ATL3 [Elaeis guineensis] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9QYC6 | RING-H2 finger protein ATL3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105041968 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology