Basic Information
Locus ID:
contig69197041G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Transport inhibitor response 1-like protein Os04g0395600
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| contig69197041 | 304 | 837 | + | contig69197041G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.69 | 20,583.41 Da | 52.55 | 86.38 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 80 | 126 | 5.7E-24 | IPR041101 |
| Pfam | PF18511 | F-box | 22 | 61 | 6.6E-21 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 55 | 3.53E-7 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 37 | 169 | 3.34E-5 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 60 | 171 | 3.5E-39 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 59 | 2.5E-17 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_010905567.1 | protein TRANSPORT INHIBITOR RESPONSE 1 [Elaeis guineensis] | 0 |
| Q9LPW7 | Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana OX=3702 GN=AFB3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9Q927 | protein TRANSPORT INHIBITOR RESPONSE 1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105032733 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | contig69197041G000010 |
| Brassicaceae | Brassica nigra | 1 | BniB02g027890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0057 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0065 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4813 |
| Plantaginaceae | Plantago ovata | 5 | Pov_00013444, Pov_00013446, Pov_00013447, Pov_00013448 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-7847 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG20.1176 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15999 |