Basic Information
Locus ID:
contig69182461G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| contig69182461 | 674 | 1035 | + | contig69182461G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.62 | 10,847.91 Da | 40.53 | 77.87 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF47473 | EF-hand | 1 | 80 | 5.99E-7 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 12 | 54 | 7.1E-6 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 11 | 7.1E-6 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24430.1 | Calcium-dependent protein kinase (CDPK) family protein. | 0 |
| RefSeq | XP_026660993.1 | CDPK-related kinase 3-like isoform X2 [Phoenix dactylifera] | 0 |
| Q9FIM9 | CDPK-related kinase 4 OS=Arabidopsis thaliana OX=3702 GN=CRK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8J5Q2 | CDPK-related kinase 3-like isoform X2 OS=Phoenix dactylifera OX=42345 GN=LOC103708498 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032068 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165530 |
| Arecaceae | Cocos nucifera | 4 | COCNU_01G016240, COCNU_10G004470, COCNU_16G000340 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.1961.V1.1, AsparagusV1_08.550.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G26530 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno15g03480 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0084940.1, HORVU.MOREX.r3.3HG0283610.1 |
| Poaceae | Zea mays | 3 | Zm00001eb093950_P001, Zm00001eb145760_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34372, nbis-gene-45412 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG02.1200 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-799 |
| Zosteraceae | Zostera marina | 2 | Zosma02g23970.v3.1, Zosma05g30300.v3.1 |