Basic Information
Locus ID:
add.evm.TU.utg000033l.67
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase RING1-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000033l | 1623241 | 1624230 | - | add.evm.TU.utg000033l.67 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 37,309.40 Da | 55.95 | 78.27 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 278 | 319 | 9.23312E-16 | - |
| Pfam | PF13639 | Ring finger domain | 277 | 319 | 3.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 271 | 324 | 1.02E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 326 | 2.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 278 | 318 | 2.4E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 278 | 319 | 12.710573 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021644651.1 | uncharacterized protein LOC110638411 [Hevea brasiliensis] | 0 |
| TrEMBL | A0A2C9W7Q0 | RING-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G152500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.288 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13279, nbisL1-mrna-15712 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3687 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16705 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000013l.181, add.evm.TU.utg000033l.67 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-21069, nbisL1-mrna-23502 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14186, nbisL1-mrna-14673 |
| Salicaceae | Populus euphratica | 1 | populus_peu12559 |