Basic Information
Locus ID:
add.evm.TU.utg000027l.207
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 6012901 | 6014019 | - | add.evm.TU.utg000027l.207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 41,029.07 Da | 74.81 | 61.05 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 168 | 209 | 1.5337E-21 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 238 | 352 | 1.9E-24 | IPR010543 |
| Pfam | PF14369 | zinc-ribbon | 5 | 38 | 3.2E-13 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 167 | 209 | 8.5E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 215 | 1.79E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 215 | 8.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 168 | 208 | 5.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 168 | 209 | 11.913911 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_021604963.1 | E3 ubiquitin-protein ligase RDUF1 [Manihot esculenta] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2P2NYS7 | RING-type E3 ubiquitin transferase OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology