Basic Information
Locus ID:
add.evm.TU.utg000027l.193
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 5894365 | 5894745 | + | add.evm.TU.utg000027l.193 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.05 | 14,155.16 Da | 60.99 | 85.87 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 77 | 120 | 8.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 67 | 123 | 3.03E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 45 | 124 | 3.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 78 | 119 | 7.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 78 | 120 | 12.445019 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43420.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040957949.1 | RING-H2 finger protein ATL72-like [Gossypium hirsutum] | 0 |
| Q9LSW9 | RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J5PWM4 | RING-type E3 ubiquitin transferase OS=Gossypium barbadense OX=3634 GN=ES319_D10G240000v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology