Basic Information
Locus ID:
add.evm.TU.utg000027l.177
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 5729060 | 5729413 | + | add.evm.TU.utg000027l.177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 13,410.99 Da | 52.65 | 80.00 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 20 | 64 | 1.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 10 | 70 | 8.08E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 69 | 2.0E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 22 | 63 | 2.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 22 | 64 | 12.1057 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01880.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021609310.1 | RING-H2 finger protein ATL1 [Manihot esculenta] | 0 |
| Q9LZV8 | RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2C9W1B6 | RING-type E3 ubiquitin transferase OS=Manihot esculenta OX=3983 GN=MANES_04G030200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag11G04249 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC108511277 |
| Asteraceae | Flaveria trinervia | 1 | Ftri10G16326 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00016119 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.283 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12640 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.177 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18967 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11790 |
| Salicaceae | Populus euphratica | 1 | populus_peu02165 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643884 |
| Solanaceae | Solanum chilense | 1 | SOLCI001724800 |