Basic Information
Locus ID:
add.evm.TU.utg000027l.105
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000027l | 4072941 | 4074200 | - | add.evm.TU.utg000027l.105 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 47,523.41 Da | 40.86 | 114.18 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 2 | 39 | 1.2E-6 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 106 | 382 | 3.3E-19 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 53 | 1.96E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 207 | 400 | 7.9E-8 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 102 | 206 | 3.4E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 41 | 2.4E-5 | - |
| SMART | SM00256 | fbox_2 | 4 | 45 | 1.1E-4 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67190.1 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_015577623.1 | F-box/LRR-repeat protein At1g67190 isoform X1 [Ricinus communis] | 0 |
| Q9ZW88 | F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2P2KSF5 | F-box domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15084, jg31960, jg3599 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5689 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah028963, Ah031130 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g159560 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg2089, Sbi_jg34425 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg2681 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002972 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl71168, Sgl73175, Sgl74750, Sgl76832 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004748, gene:ENSEOMG00000034266 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0019710, CQ.Regalona.r1.7AG0000860 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30056580 |
| Apiaceae | Apium graveolens | 4 | Ag3G00610, Ag6G00409, Ag6G00410, Ag6G02299 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G016500, scaffold003123G000010 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103717995, gene-LOC103720034, gene-LOC120109237 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.643.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri2G12344, Ftri3G04433 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G67190.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018615m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g22120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g044430.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G0663, Ceq05G1806 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G0759, Cgl05G1797 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g09730 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g15190 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG09.682 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005516 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0040660, gene-QOZ80_1BG0090710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0300760.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_056528 |
| Poaceae | Oryza coarctata | 2 | Oco01G025490, Oco02G026410 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g64030.2 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G344100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G003990, Chr03G020660, Chr05G029290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G593800 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC3AG053540 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G372500.1, TraesCS3B02G404900.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb147200_P001 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG19.1436 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g16020 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_12_RagTag.548, evm.TU.Scaffold_13_RagTag.495 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24187, nbisL1-mrna-30609 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-14392, nbisL1-mrna-8010 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15889, nbisL1-mrna-19878 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000015l.100, add.evm.TU.utg000027l.105 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00015941, Maker00018075 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-19029, nbisL1-mrna-4180 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-12026, nbisL1-mrna-15291 |
| Salicaceae | Populus euphratica | 2 | populus_peu08445, populus_peu36902 |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132600585, gene-LOC132605389, gene-LOC132607178 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI003073600, SOLCI003548700, SOLCI007454900 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002407, gene-LOC107004347, gene-LOC107030651 |
| Tamaricaceae | Reaumuria soongarica | 10 | MSTRG.2833_chr02_-, MSTRG.2953_chr02_-, STRG.13616_chr05_- ... |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G4375 |
| Zosteraceae | Zostera marina | 1 | Zosma04g17320.v3.1 |