Basic Information
Locus ID:
add.evm.TU.utg000023l.96
Species & Taxonomic ID:
Kandelia candel & 61147
Genome Assembly:
GCA_037832225.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| PERG.utg000023l | 2101192 | 2101569 | - | add.evm.TU.utg000023l.96 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 13,541.28 Da | 27.79 | 74.16 | 0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 33 | 123 | 6.7E-15 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 9 | 123 | 4.92E-17 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 26 | 125 | 4.1E-25 | - |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 29 | 125 | 22.36356 | IPR001223 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_002309324.1 | class V chitinase [Populus trichocarpa] | 0 |
| O81862 | Class V chitinase OS=Arabidopsis thaliana OX=3702 GN=ChiC PE=1 SV=1 | 0 | |
| TrEMBL | H6WS86 | Chitinase 2 OS=Populus canadensis OX=3690 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology